Publications supported by UCBREP GREAT Training Grants
Sorted by Grant Number

• Grant 2006-21– Using Mechanical Curvature to Promote Membrane Fusion, Primary Sponsor: Atul Parikh, Trainee: Babak Sanii
  Babak Sanii, Andreia Michelle Smith, Ravichandra Butti, Adrian M. Brozell, and Atul N. Parikh; Bending Membranes on Demand: Fluid Phospholipid Bilayers on Topographically Deformable Substrates; Nano Letters, Vol. 8, No. 3, 866-871, (2008).
   
• Grant 2006-21– Using Mechanical Curvature to Promote Membrane Fusion, Primary Sponsor: Atul Parikh, Trainee: Babak Sanii
  Babak Sanii and Atul N. Parikh; Surface-energy dependent spreading of lipid monolayers and bilayers; Soft Matter, Vol. 3,, 974–977, (2007).
   
• Grant 2006-21– Using Mechanical Curvature to Promote Membrane Fusion, Primary Sponsor: Atul Parikh, Trainee: Babak Sanii
  Michael C. Howland, Alan W. Szmodis, Babak Sanii, and Atul N. Parikh; Characterization of Physical Properties of Supported Phospholipid Membranes Using Imaging Ellipsometry at Optical Wavelengths; Biophysical Journal Volume 92, 1306–1317, (2007).
   
• Grant 2006-17– Bioengineering Joints: A Platform for Biotechnology and Biomaterials Therapies, Primary Sponsor: Robert L. Sah, Trainee: Megan E. Blewis
  ME Blewis, GE Nugent-Derfus, TA Schmidt, BL Schumacher, and RL Sah; A MODEL OF SYNOVIAL FLUID LUBRICANT COMPOSITION IN NORMAL AND INJURED JOINTS; European Cells and Materials Vol. 13, 26-39, (2007).
   
• Grant 2006-17– Bioengineering Joints: A Platform for Biotechnology and Biomaterials Therapies, Primary Sponsor: Robert L. Sah, Trainee: Megan E. Blewis
  Megan E. Blewis, Barbara L. Schumacher, Travis J. Klein, Tannin A. Schmidt, Michael S. Voegtline, Robert L. Sah; Microenvironment Regulation of PRG4 Phenotype of Chondrocytes; Journal of Orthopaedic Research, Volume 25, Issue 5, 685-695, (2007).
   
• Grant 2006-12– Development of a Laser Microbeam/Microscope Platform for Rapid Single Cell Bioanalytics, Primary Sponsor: Vasan Venugopalan, Trainee: Amy Hellman
  Amy N. Hellman, Kaustubh R. Rau, Helen H. Yoon, Stephanie Bae, James F. Palmer, K. Scott Phillips, Nancy L. Allbritton, and Vasan Venugopalan; Laser-Induced Mixing in Microfluidic Channels; Analytical Chemistry, Vol. 79, No. 12, 4484-4492, (2007).
   
• Grant 2006-12– Development of a Laser Microbeam/Microscope Platform for Rapid Single Cell Bioanalytics, Primary Sponsor: Vasan Venugopalan, Trainee: Amy Hellman
  Kaustubh R. Rau, Pedro A. Quinto-Su, Amy N. Hellman, and Vasan Venugopalan; Pulsed Laser Microbeam-Induced Cell Lysis: Time-Resolved Imaging and Analysis of Hydrodynamic Effects; Biophysical Journal Volume 91, 317-329, (2006).
   
• Grant 2006-03– A system level analysis of the mitotic machinery, Primary Sponsor: Jonathan Scholey, Trainee: Roy Wollman
  Gohta Goshima, Roy Wollman, Sarah S. Goodwin, Nan Zhang, Jonathan M. Scholey, Ronald D. Vale, Nico Stuurman; Genes Required for Mitotic Spindle Assembly in Drosophila S2 Cells; Sciencexpress, 1-9, (2007).
   
• Grant 2006-03– A system level analysis of the mitotic machinery, Primary Sponsor: Jonathan Scholey, Trainee: Roy Wollman
  Alex Mogilner, Roy Wollman, and Wallace F. Marshall; Quantitative Modeling Review in Cell Biology: What Is It Good for?; Developmental Cell Vol. 11, 279-287, (2006).
   
• Grant 2005-280– Engineering Synthetic, Injectable Scaffords for Stem Cell Control, Primary Sponsor: David Schaffer, Trainee: Krishanu Saha
  Krishanu Saha, Jacob F Pollock, David V Schaffer, Kevin E Healy; Designing synthetic materials to control stem cell phenotype; Current Opinion in Chemical Biology, Volume 11, Issue 4, August 2007, Pages 381-387, (2007).
   
• Grant 2005-280– Engineering the Synthetic, Injectable Scaffolds for Stem Cell Control, Primary Sponsor: David Schaffer, Trainee: Krishanu Saha
  Krishanu Saha, Elizabeth F. Irwin, Julia Kozhukh, David V. Schaffer, Kevin E. Healy; Biomimetic interfacial interpenetrating polymer networks control neural stem cell behavior; Journal of Biomedical Materials Research, 240-249, (2007).
   
• Grant 2005-268– A novel strategy for efficient protein interactome mapping, Primary Sponsor: Jing Huang, Trainee: Fulai Jin
  Fulai Jin, Larisa Avramova, Jing Huang, Tony Hazbun; A yeast two-hybrid smart-pool-array system for protein-interaction mapping; Nature Methods Vol. 4, No. 5, 405-407, (2007).
   
• Grant 2005-268– A novel strategy for efficient protein interactome mapping, Primary Sponsor: Jing Huang, Trainee: Fulai Jin
  Fulai Jin, Tony Hazbun, Gregory A. Michaud, Michael Salcius, Paul F. Predki, Stanley Fields and Jing Huang; A pooling-deconvolution strategy for biological network elucidation; Nature Methods Vol. 3, No. 3, 183-189, (2006).
   
• Grant 2005-264– Developing the magnetic resonance xenon biosensor for in situ biomolecular assays and imaging, Primary Sponsor: David E. Wemmer, Trainee: Thomas J. Lowery
  Thomas J. Lowery; NMR structure of the N-terminal domain of the replication initiator protein DnaA; N/A, N/A, (2008).
   
• Grant 2005-264– Developing the magnetic resonance xenon biosensor for in situ biomolecular assays and imaging, Primary Sponsor: David E. Wemmer, Trainee: Thomas J. Lowery
  Schroeder L, Meldrum T, Smith M, Lowery TJ, Wemmer DE, Pines A.; Temperature response of 129Xe depolarization transfer and its application for ultrasensitive NMR detection; Phys Rev Lett., N/A, (2008).
   
• Grant 2005-264– Developing the magnetic resonance xenon biosensor for in situ biomolecular assays and imaging, Primary Sponsor: David Wemmer, Trainee: Thomas Lowery
  Sandra Garcia, Lana Chavez, Thomas J. Lowery, Song-I Han, David E. Wemmer, Alexander Pines; Sensitivity enhancement by exchange mediated magnetization transfer of the xenon biosensor signal; Journal of Magnetic Resonance 184, 72-77, (2007).
   
• Grant 2005-264– Developing the magnetic resonance xenon biosensor for in situ biomolecular assays and imaging, Primary Sponsor: David Wemmer, Trainee: Thomas Lowery
  Leif Schro¨der, Thomas J. Lowery, Christian Hilty, David E. Wemmer, Alexander Pines; Molecular Imaging Using a Targeted Magnetic Resonance Hyperpolarized Biosensor; Science Volume 314, 446-449, (2006).
   
• Grant 2005-264– Developing the magnetic resonance xenon biosensor for in situ biomolecular assays and imaging, Primary Sponsor: David Wemmer, Trainee: Thomas Lowery
  Thomas J. Lowery, Sandra Garcia, Lana Chavez, E. Janette Ruiz; Optimization of Xenon Biosensors for Detection of Protein Interactions; ChemBioChem Volume 7, 65-73, (2006).
   
• Grant 2005-264– Developing the magnetic resonance xenon biosensor for in situ biomolecular assays and imaging, Primary Sponsor: David Wemmer, Trainee: Thomas Lowery
  Christian Hilty, Thomas J. Lowery, David E. Wemmer, and Alexander Pines; Spectrally Resolved Magnetic Resonance Imaging of a Xenon Biosensor; Angewandte Chemie Vol. 45, 70-73, (2006).
   
• Grant 2005-264– Developing the magnetic resonance xenon biosensor for in situ biomolecular assays and imaging, Primary Sponsor: David Wemmer, Trainee: Thomas Lowery
  Justin L. Mynar, Thomas J. Lowery, David E. Wemmer, Alexander Pines, and Jean M. J. Fre´chet; Xenon Biosensor Amplification via Dendrimer-Cage Supramolecular Constructs; J. AM. CHEM. SOC. Vol. 128, 6334-6335, (2006).
   
• Grant 2005-264– Developing the magnetic resonance xenon biosensor for in situ biomolecular assays and imaging, Primary Sponsor: David Wemmer, Trainee: Thomas Lowery
  Song-I Han, Sandra Garcia, Thomas J. Lowery, E. Janette Ruiz, Juliette A. Seeley, Lana Chavez, David S. King, David E. Wemmer, and Alexander Pines; NMR-Based Biosensing with Optimized Delivery of Polarized 129Xe to Solutions; Analytical Chemistry, Vol. 77, No. 13, 4008-4012, (2005).
   
• Grant 2005-259– Engineering Cellular Signal Processing: Introducing Synthetic Feedback Loops into Kinase Pathways, Primary Sponsor: Wendell Lim, Trainee: Caleb Bashor
  Caleb J. Bashor, Noah C. Helman, Shude Yan, Wendell A. Lim; Using Engineered Scaffold Interactions to Reshape MAP Kinase Pathway Signaling Dynamics; Science Vol. 319. no. 5869 Vol. 319. no. 5869, pp. 1539 - 1543, 1539 - 1543, (2008).
   
• Grant 2005-259– Engineering Cellular Signal Processing: Introducing Synthetic Feedback Loops into Kinase Pathways, Primary Sponsor: Wendell Lim, Trainee: Caleb Bashor
  Roby P. Bhattacharyya, Attila Reme´nyi, Matthew C. Good, Caleb J. Bashor, Arnold M. Falick, Wendell A. Lim; The Ste5 Scaffold Allosterically Modulates Signaling Output of the Yeast Mating Pathway; Science Magazine Vol. 311, 822-826, (2006).
   
• Grant 2005-255– Bio-Affinity Label-Free Sensing Using Bioreceptors Embedded Conducting Polymer Nanowires, Primary Sponsor: Nosang Myung, Trainee: Mangesh Bangar
  Mangesh A. Bangar, Carlos M. Hangarter, Bongyoung Yoo, Youngwoo Rheem, Wilfred Chen, Ashok Mulchandani, Nosang V. Myung; Magnetically Assembled Multisegmented Nanowires and Their Applications; Electroanalysis, N/A, (2008).
   
• Grant 2005-255– Bio-Affinity Label-Free Sensing Using Bioreceptors Embedded Conducting Polymer Nanowires, Primary Sponsor: Nosang Myung, Trainee: Mangesh Bangar
  Adam K. Wanekaya, Mangesh A. Bangar, Minhee Yun, Wilfred Chen, Nosang V. Myung, and Ashok Mulchandani; Field-Effect Transistors Based on Single Nanowires of Conducting Polymers; J. Phys. Chem. C, Vol. 111, No. 13, 5218-5221, (2007).
   
• Grant 2005-255– Bio-Affinity Label-Free Sensing Using Bioreceptors Embedded Conducting Polymer Nanowires, Primary Sponsor: Nosang Myung, Trainee: Mangesh Bangar
  Kumaran Ramanathan, Mangesh A. Bangar, Minhee Yun, Wilfred Chen, Ashok Mulchandani, Nosang V. Myung; In Situ Fabrication of Single Poly(methyl pyrrole) Nanowire; Electroanalysis 19, No. 7-8, 793-797, (2007).
   
• Grant 2005-255– Bio-Affinity Label-Free Sensing Using Bioreceptors Embedded Conducting Polymer Nanowires, Primary Sponsor: Nosang Myung, Trainee: Mangesh Bangar
  Yeonho Im, Choonsup Lee, Richard P. Vasquez, Mangesh A. Bangar, Nosang V. Myung, Eric J. Menke, Reginald M. Penner, and Minhee Yun; Investigation of a Single Pd Nanowire for Use as a Hydrogen Sensor; small 2006, 2, No. 3, 356-358, (2006).
   
• Grant 2005-253– A novel system to quantitatively analyze cause-effect relationships in molecular and cellular pathogenesis, Primary Sponsor: Steven Finkbeiner, Trainee: Siddhartha Mitra
  Vikram R Rao, Sean A Pintchovski, Jeannie Chin, Carol L Peebles, Siddhartha Mitra, & Steven Finkbeiner; AMPA receptors regulate transcription of the plasticityrelated; NATURE NEUROSCIENCE VOLUME 9 [ NUMBER 7, 887-895, (2006).
   
• Grant 2005-249– Measuring Thermodynamics and Kenetics of RNA folding, One Molecule at a Time, Primary Sponsor: Ignacio Tinoco, Trainee: Jeffrey Vieregg
  Pan T.X. Li, Jeffrey Vieregg, and Ignacio Tinoco, Jr.; How RNA Unfolds and Refolds; Annu. Rev. Biochem., 77-100, (2008).
   
• Grant 2005-249– Measuring Thermodynamics and Kenetics of RNA folding, One Molecule at a Time, Primary Sponsor: Ignacio Tinoco, Trainee: Jeffrey Vieregg
  Jeffrey Vieregg, Wei Cheng, Carlos Bustamante, and Ignacio Tinoco, Jr.; Measurement of the Effect of Monovalent Cations on RNA Hairpin Stability; J. AM. CHEM. SOC., 14966-14973, (2007).
   
• Grant 2005-249– Measuring Thermodynamics and Kinetics of RNA folding, One molecule at a time, Primary Sponsor: Ignacio Tinoco, Trainee: Jeffrey Vieregg
  Jeffrey R. Vieregg, Ignacio Tinoco Jr.; Modeling RNA folding under mechanical tension; Molecular Physics Vol. 104, No. 8, 1343-1352, (2006).
   
• Grant 2005-246– Towards an in silico mitochondrion, Primary Sponsor: Bernhard Palsson, Trainee: Thuy Vo
  Thuy D. Vo and Bernhard O. Palsson; Building the power house: recent advances in mitochondrial studies through proteomics and systems biology; Am J Physiol Cell Physiol 292, 164-177, (2007).
   
• Grant 2005-246– Towards an in silico mitochondrion, Primary Sponsor: Bernhard Palsson, Trainee: Thuy Vo
  Thuy D. Vo, Shu K. Lim, W. N. Paul Lee, and Bernhard O. Palsson; Isotopomer analysis of cellular metabolism in tissue culture: A comparative study between the pathway and network-based methods; Metabolomics, Vol. 2, No. 4, 243-256, (2006).
   
• Grant 2005-246– Towards an in silico mitochondrion, Primary Sponsor: Bernhard Palsson, Trainee: Thuy Vo
  Thuy D. Vo, Bernhard O. Palsson; Isotopomer Analysis of Myocardial Substrate Metabolism: A Systems Biology Approach; Wiley Periodicals, Inc., 972-983, (2005/06).
   
• Grant 2005-246– Towards an in silico mitochondrion, Primary Sponsor: Bernhard Palsson, Trainee: Thuy Vo
  Ines Thiele, Thuy D. Vo, Nathan D. Price, Bernhard Palsson; Expanded Metabolic Reconstruction of Helicobacter pylori (iIT341 GSM/GPR): an In Silico Genome-Scale Characterization of Single- and Double-Deletion Mutants; JOURNAL OF BACTERIOLOGY Vol. 187, No. 16, 5818–5830, (2005).
   
• Grant 2005-245– Integrated Biophonotic Waveguide devices for optical studies of single biomolecules, Primary Sponsor: Holger Schmidt, Trainee: Dongliang Yin
  D. Yin, E.J. Lunt, A. Barman, A.R. Hawkins, H. Schmidt; Microphotonic control of single molecule flourescence correlation specroscopy using planar optofluidics; Optics Express Vol. 15, No. 12, 7290-7295, (2007).
   
• Grant 2005-245– Integrated Biophonotic Waveguide devices for optical studies of single biomolecules, Primary Sponsor: Holger Schmidt, Trainee: Dongliang Yin
  Wenge Yang, Donald B. Conkey, Bin Wu, Dongliang Yin, Aaron R. Hawkins, Holger Schmidt; Atomic specroscopy on a chip; Nature Photonics Vol 1., 331-335, (2007).
   
• Grant 2005-245– Integrated Biophonotic Waveguide devices for optical studies of single biomolecules, Primary Sponsor: Holger Schmidt, Trainee: Dongliang Yin
  M. I. Rudenko, D. Yin, M. Holmes, A. R. Hawkins, H. Schmidt; Integration and characterization of SiN nanopores for single-molecule detection in liquid-core ARROW waveguides; Proc. Of SPIE Vol. 6444, 64440L-(1-11), (2007).
   
• Grant 2005-245– Integrated Biophonotic Waveguide devices for optical studies of single biomolecules, Primary Sponsor: Holger Schmidt, Trainee: Dongliang Yin
  Dongliang Yin, Evan J. Lunt, Mikkhail I. Rudenko, David W. Deamer, Aaron R. Hawkins, Holger Schmidt; Planar optofluidic chip for single particle detection, manipulation, and analysis; Lab Chip Vol. 7, 1171–1175, (2007).
   
• Grant 2005-244– Trehalose Preservation of Model Cell Membranes Investigated at the Nanometer-Scale: Experiment and Simulation, Primary Sponsor: Rolland Faller, Trainee: Sandra Bennun-Serrano
  Sandra V. Bennun, Roland Faller, and Marjorie L. Longo; Drying and Rehydration of DLPC/DSPC Symmetric and Asymmetric Supported Lipid Bilayers: a Combined AFM and Fluorescence Microscopy Study; Langmuir Volume 24, 10371-10381, (2008).
   
• Grant 2005-244– Trehalose Preservation of Model Cell Membranes Investigated at the Nanometer-Scale: Experiment and Simulation, Primary Sponsor: Rolland Faller, Trainee: Sandra Bennun-Serrano
  Sandra V. Bennun, Marjorie L. Longo, and Roland Faller; Molecular-Scale Structure in Fluid-Gel Patterned Bilayers: Stability of Interfaces and Transmembrane Distribution; Langmuir Volume 23, 12465-12468, (2007).
   
• Grant 2005-244– Trehalose Preservation of Model Cell Membranes Investigated at the Nanometer-Scale: Experiment and Simulation, Primary Sponsor: Rolland Faller, Trainee: Sandra Bennun-Serrano
  Sandra V. Bennun, Margie Longo, and Roland Faller; Phase and Mixing Behavior in Two-Component Lipid Bilayers: A Molecular Dynamics Study in DLPC/DSPC Mixtures; J. Phys. Chem. B, Vol. 111, No. 32, 9504-9512, (2007).
   
• Grant 2005-244– Trehalose Preservation of Model Cell Membranes Investigated at the Nanometer-Scale: Experiment and Simulation, Primary Sponsor: Rolland Faller, Trainee: Sandra Bennun-Serrano
  Sandra V. Bennun, Allison N. Dickey, Chenyue Xing, Roland Faller; Simulations of biomembranes and water: Important technical aspects; Fluid Phase Equilibria 261, 18-25, (2007).
   
• Grant 2005-244– Trehalose Preservation of Model Cell Membranes Investigated at the Nanometer-Scale: Experiment and Simulation, Primary Sponsor: Rolland Faller, Trainee: Sandra Bennun Serrano
  Jeff M. Switzer, Sandra V. Bennun, Marjorie L. Longo, Ahmet Palazoglu, Roland Faller; Karhunen-Loeve analysis for pattern description in phase separated lipid bilayer systems; The Journal of Chemical Physics, 234906, (2006).
   
• Grant 2005-244– Trehalose Preservation of Model Cell Membranes Investigated at the Nanometer-Scale: Experiment and Simulation, Primary Sponsor: Rolland Faller, Trainee: Sandra Bennun
  Allison N. Dickey, Sandra Bennun-Serrano, Roland Faller; Multiscale Modeling of structure and phase behavior in heterogeneous lipid bilayers; ESAT 2006, 34-37, (2006).
   
• Grant 2005-240– The Chemical and Mechanical Properties of the Bio-Halogenated Coating of the Nereis Jaws, Primary Sponsor: Galen Stucky, Trainee: Rashda Khan
  Rashda K. Khan, Peter K. Stoimenov, Thomas E. Mates, J. Herbert Waite, and Galen D. Stucky; Exploring Gradients of Halogens and Zinc in the Surface and Subsurface of Nereis Jaws; Langmuir, 8465-8471, (2006).
   
• Grant 2005-240– The Chemical and Mechanical Properties of the Bio-Halogenated Coating of the Nereis Jaws, Primary Sponsor: Galen Stucky, Trainee: Rashda Khan
  Henrik Birkedal , Rashda K. Khan, Nelle Slack , Chris Broomell, Helga C. Lichtenegger, Frank Zok, Galen D. Stucky, and J. Herbert Waite; Halogenated Veneers: Protein Cross-Linking and Halogenation in the Jaws of Nereis, a Marine Polychaete Worm; Chem Bio Chem, 1392-1399, (2006).
   
• Grant 2005-240– The Chemical and Mechanical Properties of the Bio-Halogenated Coating of the Nereis Jaws, Primary Sponsor: Galen Stucky, Trainee: Rashda Khan
  Christopher C. Broomell, Rashda K. Khan, Dana N. Moses, Ali Miserez, Michael G. Pontin, Galen D. Stucky, Frank W. Zok and J. Herbert Waite; Mineral minimization in nature’s alternative teeth; Journal of the Royal Society Interface, 19-31, (2006).
   
• Grant 2004-33– Detection of Functional Elements in the Human Genome Using Comparative Genomics, Primary Sponsor: David Haussler, Trainee: Adam Siepel
  Katherine S. Pollard, Sofie R. Salama, Nelle Lambert, Marie-Alexandra Lambot, Sandra Coppens, Jakob S. Pedersen, Sol Katzman, Bryan King, Courtney Onodera, Adam Siepel, Andrew D. Kern, Colette Dehay, Haller Igel, Manuel Ares Jr, Pierre Vanderhaeghen & David Haussler; An RNA gene expressed during cortical development evolved rapidly in humans; Nature Vol. 443, No. 14, 167-172, (2006).
   
• Grant 2004-33– Detection of functional elements in the human genome using comparative genomics and evolutionary models, Primary Sponsor: David Haussler, Trainee: Adam Siepel
  Siepel, A., Bejerano, G., Pedersen, J.S., Hinrichs, A., Hou, M., et al.; Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes; Genome Research 2005 August; 15(8), 1034-1050, (2005). submitted
   
• Grant 2004-33– Detection of functional elements in the human genome using comparative genomics and evolutionary models, Primary Sponsor: David Haussler, Trainee: Adam Siepel
  Bejerano G, Siepel AC, Kent WJ, Haussler D; Computational screening of conserved genomic DNA in search of functional noncoding elements; Nature Methods, 2(7):535-45, (2005).
   
• Grant 2004-33– Detection of functional elements in the human genome using comparative genomics and evolutionary models, Primary Sponsor: David Haussler, Trainee: Adam Siepel
  Siepel, A. and Haussler, D.; Phylogenetic hidden Markov models; Journal of Computational Biology Volume 11, Numbers2-3, 2004, pp 413-428, (2005). Book Chapter
   
• Grant 2004-33– Detection of Functional Elements in the Human Genome Using Comparative Genomics, Primary Sponsor: David Haussler, Trainee: Adam Siepel
  Adam Siepel, Gill Bejerano, Jakob S. Pedersen, Angie S. Hinrichs, Minmei Hou, Kate Rosenbloom, Hiram Clawson, John Spieth, LaDeana W. Hillier, Stephen Richards, George M. Weinstock, Richard K. Wilson, Richard A. Gibbs, W. James Kent, Webb Miller, and David Haussler; Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes; Genome Research, 1034-1050, (2005).
   
• Grant 2004-33– Detection of functional elements in the human genome using comparative genomics and evolutionary models, Primary Sponsor: David Haussler, Trainee: Adam Siepel
  International Chicken Genome Sequencing Consortium; Sequencing and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution; Nature, 432:695-716, (2004).
   
• Grant 2004-33– Detection of functional elements in the human genome using comparative genomics and evolutionary models, Primary Sponsor: David Haussler, Trainee: Adam Siepel
  ENCODE Project Consortium; The ENCODE (ENCyclopedia Of DNA Elements) Project; Science, 306:636-640, (2004).
   
• Grant 2004-30– Dielectric Labeling and Dielectrophoretic Manipulation of Cells, Primary Sponsor: Hyongsok (Tom) Soh, Trainee: Jiangrong Qian
  Xiaoyuan Hu, Paul H. Bessette, Jiangrong Qian, Carl D. Meinhart, Patrick S. Daugherty, Hyongsok T. Soh; Marker Specific Sorting of Rare Cells Using Dielectrophoresis; PNAS 11/1/2005 vol. 102 no. 44, 15757-15761, (2005).
   
• Grant 2004-29– Nucleoprotein and nanoparticle-based molecular electronics, Primary Sponsor: Norbert Reich, Trainee: August Estabrook
  Braun G, Inagaki K, Estabrook RA, Wood DK, Levy E, Strouse GF, Cleland AN, Reich NO; Gold Nano-particle Decoration of DNA on Silicon; Langmuir 2005, 21, 10699-10701, (2005). submitted
   
• Grant 2004-29– Nucleoprotein and nanoparticle-based molecular electronics, Primary Sponsor: Norbert Reich, Trainee: August Estabrook
  Estabrook RA, Luo J, Purdy MM, Sharma V, Weakliem P, Bruice TC, Reich NO; Statistical coevolution analysis and molecular dynamics: identification of amino acid pairs essential for catalysis; Proc Natl Acad Sci USA, 102(4):994-9, (2005).
   
• Grant 2004-27– Oral Delivery of Macromolecules Using Intestinal Patches: Applications for Insulin Delivery, Primary Sponsor: Samir Mitragotri, Trainee: Kathryn Whitehead
  Whitehead K, Shen Z, Mitragotri S; Oral delivery of macromolecules using intestinal patches: applications for insulin delivery; J Control Release, 98(1):37-45, (2004).
   
• Grant 2004-27– Oral Delivery of Macromolecules Using Intestinal Patches: Applications for Insulin Delivery, Primary Sponsor: Samir Mitragotri, Trainee: Kathryn Whitehead
  Whitehead K, Mitragotri S; Oral Delivery of Macromolecules; Drug Delivery Companies Report, PharmaVentures, (2004).
   
• Grant 2004-27– Oral Delivery of Macromolecules Using Intestinal Patches: Applications for Insulin Delivery, Primary Sponsor: Samir Mitragotri, Trainee: Kathryn Whitehead
  Whitehead K, Shen Z, Mitragotri S; Oral Delivery of Macromolecules Using Intestinal Patches: Applications for Insulin Delivery; American Institute of Chemical Engineers Annual meeting, , (2004). Presentation
   
• Grant 2004-27– Oral Delivery of Macromolecules Using Intestinal Patches: Applications for Insulin Delivery, Primary Sponsor: Samir Mitragotri, Trainee: Kathryn Whitehead
  Whitehead K, Shen Z, Mitragotri S; Oral Insulin Delivery Using Intestinal Patches; Diabetes Technology Society Meeting, , (2004). Presentation
   
• Grant 2004-27– Oral Delivery of Macromolecules Using Intestinal Patches: Applications for Insulin Delivery, Primary Sponsor: Samir Mitragotri, Trainee: Kathryn Whitehead
  Whitehead K, Shen Z, Mitragotri S; Oral Delivery of Macromolecules Using Intestinal Patches: Applications to Insulin Delivery; Proceedings of the Controlled Release Society, , (2004). Presentation
   
• Grant 2004-16– Remote Actuation of Magnetic Nanoparticles using Radiofrequency Fields, Primary Sponsor: Sangeeta Bhatia, Trainee: Austin Derfus
  Austin M. Derfus, Alice A. Chen, Dal-Hee Min, Erkki Ruoslahti, and Sangeeta N. Bhatia; Targeted Quantum Dot Conjugates for siRNA Delivery; Bioconjugate Chem. Vol. 18, 1391-1396, (2007).
   
• Grant 2004-16– Remote Actuation of Magnetic Nanoparticles using Radiofrequency Fields, Primary Sponsor: Sangeeta Bhatia, Trainee: Austin Derfus
  Ji-Ho Park, Austin M. Derfus, Ester Segal, Kenneth S. Vecchio, Sangeeta N. Bhatia, and Michael J. Sailor; Local Heating of Discrete Droplets Using Magnetic Porous Silicon-Based Photonic Crystals; J. AM. CHEM. SOC. Vol. 128, 7938-7946, (2006).
   
• Grant 2004-16– Remote Actuation of Magnetic Nanoparticles using Radiofrequency Fields, Primary Sponsor: Sangeeta Bhatia, Trainee: Austin Derfus
  Michael P. Schwartz, Austin M. Derfus, Sara D. Alvarez, Sangeeta N. Bhatia, and Michael J. Sailor; The Smart Petri Dish: A Nanostructured Photonic Crystal for Real-Time Monitoring of Living Cells; American Chemical Society, N/A, (2006).
   
• Grant 2004-16– Remote Actuation of Magnetic Nanoparticles using Radiofrequency Fields, Primary Sponsor: Sangeeta Bhatia, Trainee: Austin Derfus
  AA Chen, AM Derfus, SR Khetani, and SN Bhatia; Quantum Dots to Monitor RNAi Delivery and Improve Gene Silencing; Nucleic Acids Research, Volume 33, Number 22 pp. e190, (2005). submitted
   
• Grant 2004-16– Remote Actuation of Magnetic Nanoparticles using Radiofrequency Fields, Primary Sponsor: Sangeeta Bhatia, Trainee: Austin Derfus
  AM Derfus, G von Maltzahn, TJ Harris, T Duza, KS Vecchio, E Ruoslahti, and SN Bhatia; Remotely Triggered Release from Magnetic Nanoparticles; Advanced Materials 2007., 19, pp 3932-3936, (2005).
   
• Grant 2004-14– Parallel Manipulation of Single Cells Using Optoelectronic Tweezers, Primary Sponsor: Ming C. Wu, Trainee: Pei-Yu Chiou
  Pei-Yu Chiou, Aaron T. Ohta, Arash Jamchidi, Hsan-Yin Hsu, Jeffery B. Chou, Ming C. Wu; LIGHT-ACTUATED AC ELECTROOSMOSIS FOR OPTICAL MANIPULATION OF NANOSCALE PARTICLES; N/A, N/A, (N/A).
   
• Grant 2004-14– Parallel Manipulation of Single Cells Using Optoelectronic Tweezers, Primary Sponsor: Ming C. Wu, Trainee: Pei-Yu Chiou
  Pei-Yu Chiou, Aaron T. Ohta, Arash Jamshidi, Hsin-Yi Hsu, Ming C. Wu; Light-Actuated AC Electroosmosis for Nanoparticle Manipulation; Journal of Microelectromechanical Systems Vol. 17, No. 3, 525-531, (2008).
   
• Grant 2004-14– Parallel Manipulation of Single Cells Using Optoelectronic Tweezers, Primary Sponsor: Ming Wu, Trainee: Pei-Yu (Eric) Chiou
  P. Y. Chiou, Aaron T. Ohta, Ming C. Wu; Massively parallel optical manipulation of single cells and microparticles using optical images; Nature, 436, 370-372, (2005). accepted
   
• Grant 2004-14– Parallel Manipulation of Single Cells Using Optoelectronic Tweezers, Primary Sponsor: Ming Wu, Trainee: Pei-Yu (Eric) Chiou
  P. Y. Chiou, Aaron T. Ohta, Ming C. Wu; Microvision activated optical manipulation on microscopic particles; Proceedings IEEE Seventeenth Annual International Conference on Micro Electro Mechanical Systems, (MEMS '05) pp. 682-685, (2005).
   
• Grant 2004-14– Parallel Manipulation of Single Cells Using Optoelectronic Tweezers, Primary Sponsor: Ming Wu, Trainee: Pei-Yu (Eric) Chiou
  P. Y. Chiou, Aaron T. Ohta, M. C. Wu; Toward all optical lab-on-a-chip system: optical manipulation of both microfluid and microscopic particles; Proceedings of Spie - the International Society for Optical Engineering, AM266, (2004).
   
• Grant 2004-11– Quantum Dots as Nano-Scale Probes of Dendritic Cell Trafficking and Antigen Presentation in Vivo, Primary Sponsor: Michael D. Cahalan, Trainee: Debasish Sen
  Debasish Sen, Thomas J. Deerinck, Mark H. Ellisman, Ian Parker, Michael D. Cahalan; Quantum Dots for Tracking Dendritic Cells and Priming an Immune Response In Vitro and In Vivo; PLoS ONE Vol. 3, Issue 9, e3290 pg 1-13, (2008).
   
• Grant 2004-09– Study of protein interaction with DNA and membranes in microarray format using a novel lebel-free, real-time optical imaging microscope, Primary Sponsor: Xiangdon Zhu, Trainee: James Landry
  Xiangdong Zhu, James P. Landry, Yung-Shin Sun, Jeff P. Gregg, Kit S. Lam, and Xiaowen Guo; Oblique-incidence reflectivity difference microscope for label-free high-throughput detection of biochemical reactions in a microarray format; APPLIED OPTICS Vol. 46, No. 10, 1890-1895, (2007).
   
• Grant 2004-09– Study of protein interaction with DNA and membranes in microarray format using a novel lebel-free, real-time optical imaging microscope, Primary Sponsor: Xiangdon Zhu, Trainee: James Landry
  J. P. Landry, J. Gray, M. K. O’Toole, and X. D. Zhu; Incidence-angle dependence of optical reflectivity difference from an ultrathin film on solid surface; Optics Letters Vol. 31, No. 4, 531-533, (2006).
   
• Grant 2004-09– Study of protein interaction with DNA and membranes in microarray format using a novel lebel-free, real-time optical imaging microscope, Primary Sponsor: Xiangdon Zhu, Trainee: James Landry
  X.D. Zhu; Comparison of two optical techniques for label-free detection of biomolecular microarrays on solids; Optics Communications 259, 751-753, (2006).
   
• Grant 2004-04– A Microfabricated Genetic Analyzer for Rapid Forensic Studies and Human Identification, Primary Sponsor: Richard Mathies, Trainee: Hang Leng (Stephanie) Yeung
  Stephanie H. I. Yeung, Igor L. Medintz, Susan A. Greenspoon, and Richard A. Mathies; Rapid Determination of Monozygous Twinning with a Microfabricated Capillary Array Electrophoresis Genetic-Analysis Device; Clinical Chemistry 54:6, 1080-1084, (2008).
   
• Grant 2004-04– A Microfabricated Genetic Analyzer for Rapid Forensic Studies and Human Identification, Primary Sponsor: Richard Mathies, Trainee: Hang Leng (Stephanie) Yeung
  Stephanie H. I. Yeung Tae Seok Seo Cecelia A. Crouse Susan A. Greenspoon Thomas N. Chiesl Jeff D. Ban Richard A. Mathies; Fluorescence energy transfer-labeled primers for high-performance forensic DNA profiling; Electrophoresis 2008, 29,, 2251–2259, (2008).
   
• Grant 2004-04– A Microfabricated Genetic Analyzer for Rapid Forensic Studies and Human Identification, Primary Sponsor: Richard Mathies, Trainee: Hang Leng (Stephanie) Yeung
  Stephanie H.I. Yeung, B.S.; Susan A. Greenspoon, Ph.D.; Amy McGuckian, M.S.; Cecelia A. Crouse, Ph.D.; Charles A. Emrich, B.S.; Jeffrey Ban, M.S.; and Richard A. Mathies, Ph.D.; Rapid and High-Throughput Forensic Short Tandem Repeat Typing Using a 96-Lane Microfabricated Capillary Array Electrophoresis Microdevice
  ; J Forensic Sci, July 2006, Vol. 51, No. 4, 740-747, (2006).